We use cookies to personalize our website and to analyze web traffic to improve the user experience. You may decline these cookies although certain areas of the site may not function without them. Please refer to our privacy policy for more information.

Settings

Save and close

JAX Frontend Platform

Center for Biometric Analysis Grant Services

Letters of Support:

Investigators are encouraged to contact the Center for Biometric Analysis (CBA) during the early stages of project planning, especially for projects being proposed for grant applications. Please contact the CBA Senior Director for a letter of support.

Budget Estimation: Given the custom nature of each investigator’s project, please contact us to discuss service pricing.

Facilities and Other Resources Documentation:

The CBA is a state-of-the-art, ~21,000-ft2 dedicated mouse phenotyping facility located on the JAX campus in Bar Harbor, ME, that has extensive expertise and facilities for sensitive phenotyping of live mice. The three-floor CBA houses facilities for phenotyping in four major domains, and provides dedicated phenotyping expertise in each domain: Metabolic Phenotyping, encompassing multiple areas of metabolism; Neurobehavioral Phenotyping, which is carried out in the Connie Cogswell Rossi Center component of the CBA and encompasses diverse areas of behavior; Physiology and Cardiovascular Phenotyping, comprising diverse areas of physiology and cardiovascular biology; and Pre-clinical Imaging, focused on visualization of mouse anatomy, function, and physiology. The top floor, which includes 12 procedure rooms, a surgery suite, and an animal-housing room that can accommodate 550 positive individually vented (PIV) cages, is dedicated to Neurobehavioral Phenotyping. The middle floor, which includes 13 procedure rooms, and an animal-housing room that can accommodate 550 PIV cages, houses Physiology and Cardiovascular Phenotyping and Metabolic Phenotyping.  The ground floor, which is dedicated to Pre-clinical Imaging, includes two procedure rooms, an MRI suite, and an animal-housing room that can accommodate 50 PIV cages.

The CBA houses diverse phenotyping equipment for each domain. Neurobehavioral Phenotyping capabilities include assessments of general activity, motor and fine motor function, social behavior, anxiety- and depression-related behaviors, addiction-related behaviors, seizure activity, cognitive functions (learning, memory, and attention), sensorial responses (nociception, tactile, hearing, and visual abilities), aging characteristics (frailty), and home cage activity monitoring including voluntary exercise. Physiology and Cardiovascular Phenotyping capabilities include measurement of electroretinography and visual evoked potential; vision behavior via visual acuity; anterior segment, fundus, and optical coherence tomography imaging of the eye; ECG analysis of heart electrical activity; high-throughput, non-invasive measurement of conscious heart rate and blood pressure; telemetry devices enabling continuous or scheduled measurement of blood pressures or biopotentials (electrocardiography or electroencephalography/ electromyography) in up to 16 conscious, freely moving mice simultaneously; physiological assessment of hearing; and sleep/wake monitoring of up to 80 individually housed mice simultaneously. Metabolic Phenotyping capabilities include measurement of whole-body composition of fat and lean tissue mass; whole-body glucose, insulin, mixed meal and pyruvate tolerance; sub-cutaneous temperature; exercise and endurance testing; glucose-stimulated insulin secretion via hyperglycemic clamps; and parameters of energy balance (including energy expenditure, food intake, and activity) via an automated home cage-based phenotyping system. Pre-clinical Imaging capabilities include: microcomputed X-ray tomography, both ex vivo and in vivo platforms, enabling 3-D reconstruction and assessment of body structures and longitudinal studies of individual animals; an MRI scanner enabling non-invasive, non-ionizing radiation, in vivo assessment of anatomy, micro-structure and function, and in vivo longitudinal studies of individual animals, with sensitivity to tissue and molecular parameters of composition and motion; dual-emission X-ray absorptiometry for quantification of body composition and bone densitometry; collection of 2-D high-resolution digital X-ray radiographic images; and ultrasonography for anatomical and functional scanning of mice, including high-resolution analysis of heart function and blood flow.

The CBA is located within the Research Animal Facility, and all rooms in the CBA are constructed in accordance with the requirements of The Guide for the Care and Use of Laboratory Animals (NIH, 2011). The CBA is a well-integrated component of the JAX Repository, one of the largest mouse repository and rederivation programs in the world, where thousands of different mouse strains and models are easily accessible.

Example of equipment within the Center for Biometric Analysis. Due to evolving equipment needs, this list may change over time. 

Center for Biometric Analysis equipment (located in Bar Harbor, ME)

Metabolic Phenotyping

  • EchoMRI™-100 nuclear magnetic resonance (NMR) body composition analyzer
  • Bayer Contour® Next glucometer
  • Sable Systems International: Promethion™ multiplexed metabolic screening system (indirect calorimetry cages)
  • Bio Medic Data Systems, Inc. wireless IPTT-300 implantable temperature and ID micro-transponder reader
  • Harvard Apparatus Five-Lane Treadmill
  • Hyperglycemic clamp setup

Neurobehavioral Phenotyping

  • Noldus 3-chamber social approach arenas with EthoVision automated tracking software
  • Omnitech Electronics, Inc. open-field arenas housed in Omnitech sound-attenuating chambers, with AccuScan software
  • Med Associates, Inc. elevated zero maze system with Noldus EthoVision automated tracking software
  • Stoelting electroconvulsive stimulus generator
  • Noldus ErasmusLadder
  • Stoelting Forced Swim Tanks with Noldus EthoVision automated tracking software
  • Bioseb grip strength meters
  • Omnitech Electronics, Inc. Nose Poke – Baited Hole Board
  • Physitemp RET-3 Rectal probe
  • Noldus PhenoTyper home cage monitoring systems
  • Harvard Apparatus hot plate
  • Stoelting dynamic cold plate
  • Lafayette Instrument touchscreen chambers
  • Omnitech Electronics, Inc. light/dark testing arenas with AccuScan software
  • Med Associates, Inc. operant conditioning chambers
  • Med Associates, Inc. tail suspension testing units
  • Med Associates, Inc. novelty place preference chambers
  • Noldus PhenoTyper dyadic reciprocal social interaction arenas with Noldus EthoVision automated tracking software
  • Ugo Basile RotaRod
  • San Diego Instruments, Inc. acoustic startle and pre-pulse inhibition chamber
  • CleverSys, Inc. treadmill
  • Bioseb dynamic weight-bearing instrumentation
  • Stoelting von Frey manual filaments
  • Noldus Morris water maze tank with Noldus EthoVision automated tracking software
  • Med Associates, Inc. wireless running wheels
  • Y-maze arena (fabricated internally) with Noldus EthoVision automated tracking software
  • Open fields for place and novel object recognition with Noldus EthoVision automated tracking software
  • Coulbourn Instruments contextual and cued fear conditioning units
  • Actimetrics active and passive avoidance

Physiology and Cardiovascular Phenotyping

  • Diagnosys Celeris High-Throughput electroretinography testing system
  • Stoelting OptoDrum system
  • Pheonix Micron™ V retinal camera
  • Phoenix Micron™ Anterior Segment Slit Lamp
  • Envisu R4410 XHR spectral-domain optical coherence tomography (SD-OCT) research system
  • Intelligent Hearing Systems auditory brainstem response system
  • Signal Solutions PiezoSleep Mouse Behavioral Tracking system
  • Visitech Systems BP-2000 Series II blood pressure analyzer
  • ADInstruments ECG equipment (Bio Amps, PowerLab, LabChart)
  • Data Sciences International PhysioTel telemetry system with Ponemah software plus variable numbers of implantable telemetry devises to measure electroencephalography (with simultaneous video capture), blood pressure, or electrocardiography
  • Transonic Systems, Inc., Scisense ADVantage ADV500 small-animal pressure volume loop system
  • VisualSonics Vevo 2100 High-frequency Ultrasound Machine with MS550D (55 MHz) MicroScan and MS250S (24 MHz) transducersPre-clinical Imaging
  • PerkinElmer Quantum GX microCT in vivo imaging system
  • Bruker SKYSCAN 1172 X-ray microCT ex vivo imaging system, accessed through the Knockout Mouse Phenotyping Program (KOMP2)
  • Bruker BioSpec 7T/20 MRI and MRS system with 1H MRI Cryoprobe and high-power gradient amplifier
  • Faxitron UltraFocusDXA combined densitometer and 2D high-resolution digital X-ray imager

Acknowledgement & Authorship:

If you have used any of JAX’s Scientific Services please acknowledge the Service(s) used in all manuscripts, publications, grant applications, press releases, and presentations. Example language for the use of the CBA is below:

“We gratefully acknowledge the contribution of [optional: name of person] and the Center for Biometric Analysis at The Jackson Laboratory for their contributions to this study.”

©2025 The Jackson Laboratory